PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT27762

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 114aa MW: 12059.5 Da PI: 4.547

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT27762	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	99.6	4.5e-31	2	113	262	373
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 ++ysa+fd+lea++p+ s er vE+e+lg ei vva g+ r +++e W ++++++G++p p s++a++qa+lllr ++ s+gy ee g+ +lg EMT27762 2 DFYSAVFDALEATVPPGSAERLAVEQEILGTEIDAVVAGPGSG-GGRPRSFEAWTAAVRASGLSPWPASTFAVSQARLLLRLHYpSEGYAAEEAGGACFLG 101 79**************************************9.9**************************************************** PP GRAS 362 WkdrpLvsvSaW 373 W++r+L+svS+W EMT27762 102 WQTRTLMSVSSW 113 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.296	1	93	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-28	2	113	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MDFYSAVFDA LEATVPPGSA ERLAVEQEIL GTEIDAVVAG PGSGGGRPRS FEAWTAAVRA 60 SGLSPWPAST FAVSQARLLL RLHYPSEGYA AEEAGGACFL GWQTRTLMSV SSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-14	1	113	267	378	Protein SCARECROW
5b3h_A	3e-14	1	113	266	377	Protein SCARECROW
5b3h_D	3e-14	1	113	266	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF710617	1e-151	JF710617.1 Hordeum vulgare lateral suppressor 2 (LAS2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196668.1	3e-74	protein MONOCULM 1-like
Swissprot	Q84MM9	8e-39	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A3B6QD85	8e-73	A0A3B6QD85_WHEAT; Uncharacterized protein
TrEMBL	A0A453NLF4	8e-73	A0A453NLF4_AEGTS; Uncharacterized protein
TrEMBL	A0A453NLV0	8e-74	A0A453NLV0_AEGTS; Uncharacterized protein
TrEMBL	A0A453NM65	7e-73	A0A453NM65_AEGTS; Uncharacterized protein
TrEMBL	M8CKB0	1e-75	M8CKB0_AEGTA; Uncharacterized protein
STRING	EMT27762	2e-76	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	8e-27	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]