PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27813
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family YABBY
Protein Properties Length: 206aa    MW: 22606.5 Da    PI: 9.3455
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27813genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.54.3e-7191796170
     YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenl..ksnv..ekeesastsvssekl 101
                +eqvCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +    +++ +++   +s +  ++++s+s++ ++ ++
  EMT27813   9 PAEQVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAAQVQESSLSKPNGSNGFIRDHSvyNSLEfgSSSSSSSSKFRMPTM 109
               689******************************************98775425666667777666633333333322200222200223333333444444 PP

     YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  EMT27813 110 MFSSQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 179
               4455555554444379****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-739179IPR006780YABBY protein
SuperFamilySSF470952.75E-8124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-5126173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010158Biological Processabaxial cell fate specification
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMLNIVTV RCGHCTNLLS VSLRGQMHSP  60
VPPAAQVQES SLSKPNGSNG FIRDHSVYNS LEFGSSSSSS SSKFRMPTMM FSSQNDLLQE  120
QTLHARPPEK RQRVPSAYNR FIKEEIRRIK ANNPDISHRE AFSTAAKNWA HYPNIHFGLT  180
PERDGGKRLA VDDAAPAAKK IQGFCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0091060.0BT009106.1 Triticum aestivum clone wkm2n.pk008.p10:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.11e-153protein YABBY 6-like
SwissprotQ2QM172e-94YAB6_ORYSJ; Protein YABBY 6
TrEMBLM8C1B21e-152M8C1B2_AEGTA; Protein YABBY 6
STRINGEMT278131e-153(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-58YABBY family protein