PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27854
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 253aa    MW: 26782.2 Da    PI: 9.2604
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27854genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS942.3e-2978242230374
      GRAS 230 lvkslsPkvvvvveqeadhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWr 316
                ++sl+P +v ++++  + n++          s+l rf+  l+yy+a+f+sl++ lp++s eri +Er  lg ei+++ a   ++r        +  + W+
  EMT27854  78 HIRSLNPSLVFLIDKVDEGNGGvkgagrcgsaSLLPRFAANLRYYAAVFESLHECLPADSAERIAIERDHLGVEISDAMASLDRRRHDgdraADKVSRGWK 178
               68999999999998754444434445555555************************************************9998876511114556788** PP

      GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdg....yrveeesgslv.lgWkdrpLvsvSaWr 374
               erle+aGF+ ++ls+++++qaklll++ + + g      +e  +g ++ lgW+dr+L+++SaWr
  EMT27854 179 ERLESAGFEDARLSSRTVSQAKLLLKMKSgGGGggggGGMEAGDGKAMaLGWRDRALITASAWR 242
               ***************************9844335555667766766666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.0851216IPR005202Transcription factor GRAS
PfamPF035148.0E-2778242IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNLTLSLGVN GGAAAAKKRK VMDGVGDVGV LGAGDGGDRA TVMRLLQARD RMVKVELDHD  60
DGDNVRQSSW DPRSASAHIR SLNPSLVFLI DKVDEGNGGV KGAGRCGSAS LLPRFAANLR  120
YYAAVFESLH ECLPADSAER IAIERDHLGV EISDAMASLD RRRHDGDRAA DKVSRGWKER  180
LESAGFEDAR LSSRTVSQAK LLLKMKSGGG GGGGGGGMEA GDGKAMALGW RDRALITASA  240
WRPCRQSVGK NEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-1365243220380Protein SCARECROW
5b3h_A8e-1365243219379Protein SCARECROW
5b3h_D8e-1365243219379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173956.11e-123scarecrow-like protein 23
TrEMBLM8C0W41e-179M8C0W4_AEGTA; Uncharacterized protein
STRINGEMT278541e-180(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.16e-16SCARECROW-like 21