PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28039
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 88aa    MW: 9872.13 Da    PI: 9.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28039genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-0914551554
              HHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
       HLH 15 riNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
              +iN+ +++L++llP+a   + +s   s   +L++++ YIksL
  EMT28039 14 EINELISRLQTLLPTARrrGSSSSQASTTKMLKETCSYIKSL 55
              7**************6666666666****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.369155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-5961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-101275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-61455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-91459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGRRSRGSV SEEEINELIS RLQTLLPTAR RRGSSSSQAS TTKMLKETCS YIKSLHREVD  60
DLSDRLSDLM STMDNNSPAA EIIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168701.18e-56transcription factor ILI5-like
SwissprotA2X9L83e-40ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX03e-40ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A1D6CXL92e-54A0A1D6CXL9_WHEAT; Uncharacterized protein
TrEMBLA0A446Y7A32e-54A0A446Y7A3_TRITD; Uncharacterized protein
TrEMBLA0A453R6732e-54A0A453R673_AEGTS; Uncharacterized protein
TrEMBLM8C1C82e-54M8C1C8_AEGTA; Transcription factor bHLH135
STRINGEMT280393e-55(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.16e-10bHLH family protein