PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28125
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 515aa    MW: 59172.2 Da    PI: 8.8365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28125genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-13591371397
               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               +++++++k+ ++  +g+   + +++le+++  s+++k+   k+++++vl+ GW +Fv+  +L+ gD+++F+++g+s f   + +f
  EMT28125  59 RQQMIISKEWVRCLKGE--IPDEIKLETRNRASYTIKV--AKYQEKHVLKVGWPQFVENFHLQLGDSLLFRYNGDSLF--SIVIF 137
               46799*****9655655..6779***************..*********************************98888..66665 PP
2B3322.2e-102132911294
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-.EEEEEE-SSSEE..EE CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD.fvvFkldgrsefelvv 94 
                ++ +++ k+f+++++g+   + ++ le+++  ++ +++ ++++ ++ vl++GW +Fv+  +L+ gD +++F ++g+s f   v
  EMT28125 213 FQDKMIIQKEFVQRFKGE--IPGEIELETKNKCRYIIQV-IKNQEEQLVLAAGWGSFVQKFRLEMGDrIILFGYNGNSWF--SV 291
               56789**********877..5558***************.5888888********************5556778888887..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1744139IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-1744139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.40547140IPR003340B3 DNA binding domain
CDDcd100171.77E-1248138No hitNo description
SMARTSM010197.8E-650140IPR003340B3 DNA binding domain
PfamPF023621.4E-1059138IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-12199295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-12199295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.01202297IPR003340B3 DNA binding domain
CDDcd100171.34E-6203295No hitNo description
SMARTSM010190.19204297IPR003340B3 DNA binding domain
PfamPF023621.2E-7214291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MTYMNSLHVF TFHFFCAAGG QAKTMSPSCG RCTQRDEYNY KNLEDENKHF LVLMLGDFRQ  60
QMIISKEWVR CLKGEIPDEI KLETRNRASY TIKVAKYQEK HVLKVGWPQF VENFHLQLGD  120
SLLFRYNGDS LFSIVIFDKL GREKASSVLV DPFPPQVQGR RGKNKSHLKW LLHCRSARKM  180
NALCETCEIW DEHHYMNLDD EKKYFLMRMT GDFQDKMIIQ KEFVQRFKGE IPGEIELETK  240
NKCRYIIQVI KNQEEQLVLA AGWGSFVQKF RLEMGDRIIL FGYNGNSWFS VIILDQLGRE  300
GDGSFSSHDH VRNALGFRRV VRRNRTSSQK QQQKKDGYIT TDKTKLTPAQ EQQVKDMVQT  360
IRSRRSGITI FVALIGKANV HPGFSLTVPI MYGQEHFGDG KVICFQLGEK KWNASFNGSR  420
KYYRIESGWR SFRIKRGDLI LGNMSNNEET GPSNHDADEM DYEGEQQYLD FLSAKHSQGL  480
RGGLDDGTDA DIGTDGGAKT GGEGISTEAA TENKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-133HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186797.11e-122putative B3 domain-containing protein Os03g0621600
SwissprotQ6Z0D94e-47Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLM8BSZ10.0M8BSZ1_AEGTA; B3 domain-containing protein
STRINGEMT281250.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]