PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT28167

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bZIP

Protein Properties

Length: 211aa MW: 23474.3 Da PI: 8.9469

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28167	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	15	70	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + l EMT28167 15 KRAKRILANRQSAARSKERKARYMTELERKVQTLQTEATTLSAQLTLFQRDTTGLS 70 9****************************************999887766655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-15	11	75	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	13	76	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.43E-11	15	66	No hit	No description
Pfam	PF00170	8.1E-9	15	69	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-8	15	70	No hit	No description
CDD	cd14703	2.75E-19	16	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSPEQLAELA AIDPKRAKRI LANRQSAARS KERKARYMTE LERKVQTLQT EATTLSAQLT 60 LFQRDTTGLS SENAELKIRL QAMEQQAQLR DALNDALKQE VERLKMATGE MSNSSDAYSV 120 GLQHVLYNSS FFPQSQQNTA QHQGGARFPP PFHPPHPNVP NHQMLSHPNT LSDIMQQDHL 180 ARLQGLDISK GHPVVKSESS SISASESSST F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369285	0.0	AK369285.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175873.1	1e-152	transcription factor RF2b
Swissprot	Q6S4P4	1e-113	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	M8CL99	1e-153	M8CL99_AEGTA; Transcription factor RF2b
STRING	EMT28167	1e-153	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	5e-67	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]