PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28175
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37470.1 Da    PI: 6.1467
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28175genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.3e-131259249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              rien+ +r+  f+kR + ++K A+ LS L++++vavi+  ++gk++ +
  EMT28175 12 RIENDKKRNAAFTKRHAHLFKSASNLSALTGVRVAVILEKESGKMHGF 59
              8********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-4162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.339363IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-6525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-121073IPR002100Transcription factor, MADS-box
PfamPF003191.5E-151259IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPRQEVRSGV CRIENDKKRN AAFTKRHAHL FKSASNLSAL TGVRVAVILE KESGKMHGFG  60
TPLVQPIVDS FLSGDPLVEP LVDEQVKDRI ALLQSEVARL HMENEMLKTR ANLSLQHIKK  120
IQSQNSGMPA NNIFSKVEDL SLEDLTNLFN NLLRVKEEIR RRLPPLQHGH EPKVGGPNMR  180
QNWLLPSGPS QDHPKIHETS QQPLSSHHLP PQSVVDHAKD LPPPLQPQFQ YYASPNTITK  240
PLQNNMSPNS IVENTMDESP RFFYSGGNDT YVHESFSYDN LSNAPLDKAH EILGMDSYLD  300
YNISDLEQYK MDCVEWANNA PPGSSGGNDD DIDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8BT410.0M8BT41_AEGTA; Pheromone receptor transcription activator
STRINGEMT281750.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.14e-10AGAMOUS-like 59