PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28202
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 961aa    MW: 105426 Da    PI: 5.8362
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28202genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.8e-40153230178
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
               +CqvegC adls ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  EMT28202 153 ACQVEGCCADLSAAKDYHRRHKVCEMHAKANTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTRP 230
               5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-33146215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.291151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-37152231IPR004333Transcription factor, SBP-box
PfamPF031105.9E-29154227IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.31E-7742846IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-6743848IPR020683Ankyrin repeat-containing domain
CDDcd002041.80E-8746845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MEAARVGSQS RHLYGGGLGG ELEQARREKR VFGWDLNDWS WDSERFVATP VPAAVGNGLS  60
LNSSPSSSEE AEAEVARNGN GRVDSDKRKR VVVIHDDDNE KDEDPVGNSN NVLSLRIGGN  120
TVAGGVAEDG GVNEEDRNGK KIRVQGGSSS GPACQVEGCC ADLSAAKDYH RRHKVCEMHA  180
KANTAVVGNT VQRFCQQCSR FHLLQEFDEG KRSCRRRLAG HNKRRRKTRP ENAVGGTPIE  240
EKVSSYLLLS LLGICANFNS DNAEHLQGQE LLSNLWRNLG NVAKSLDPKE LCKLLEACQS  300
MQNRSNAGTS EAANALVNTA AAEAAGPSNS KAPFANGGEC GQTSSAVVPV QSNATMVATT  360
ETPACKFRNF DLNDTCNDME GFEDGSNCPS WIRQDSTQSP PQTSGNSDST SAQSLSSSNG  420
DAQCRTDKIV FKLFEKVPSE LPPILRSQIL GWLSSSPTDI ESHIRPGCII LTVYLRLVES  480
SWRELSENMS VYLDKLSSSS ADNFWTSGLV FVMVRHQIAF MHNGQVMLDR PLAPNSHHYC  540
KVLCISPVAA PYSATVNFRV EGFNLVSSSS RLICSIEGRC IFEEDTAIMA DDAEDEDIEY  600
LNFCCSLPDT RGRGFIEVED SGFSNGFFPF IVAEQNVCSE VCELESTFKS SSLEQPDKDN  660
AMNQALEFLH ELGWLLHRVN IISKHDKVES PVPTFNLLRF RNLGIFAMER EWCAVTKMLL  720
DLLFDGFVDA GLQSPKEVLL SENLVHSAVR GKSARMVRFL LTYKPNKNLK ETAETYLFRP  780
DARGPSAFTP LHIAAATNDA EDVLDALTDD PGLVGLNAWR NARDEIGFTP EDYARQRGND  840
AYINLVQKKI DRHLGKGHVV LGVPSSMCPG ITDGVKAGDI SLEICKAMPM TTTSASRCNI  900
CSRQAKMYPN SFARTFLYRP AMFTVMGVAV ICVCVGILLH TLPKVYAAPN FRWELLERGA  960
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-31147227484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478800.0KF447880.1 Triticum aestivum squamosa promoter-binding-like protein 6 (SPL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169994.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A453MDZ50.0A0A453MDZ5_AEGTS; Uncharacterized protein
TrEMBLM8CLD60.0M8CLD6_AEGTA; Squamosa promoter-binding-like protein 6
TrEMBLX5DBQ40.0X5DBQ4_WHEAT; Squamosa promoter-binding-like protein 6
STRINGEMT282020.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]