PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT28627

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

M-type_MADS

Protein Properties

Length: 189aa MW: 21395.6 Da PI: 10.2968

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28627	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.2	1.5e-16	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n s r vtf kRrn ++KKA EL ++C+++++v+++++ EMT28627 11 IHNRSTRRVTFKKRRNSMMKKAGELGTMCNTKACVLVYGEG 51 89************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-15	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.792	1	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-9	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-21	4	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.46E-20	4	82	No hit	No description
Pfam	PF00319	5.3E-15	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MAHKKVALRY IHNRSTRRVT FKKRRNSMMK KAGELGTMCN TKACVLVYGE GSSVPHVFPS 60 HADAVAILNR YKDMPDLVQF KNTVSQEEFL IERITKLQEE ANRFRRERED REIRILLHKA 120 MLGGSLDVHE LTLVGPKLEV ILKNLGERIA ISQNLEPTGL PTTSSIGHQR HRDGASDDVS 180 SASTAELHR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186941.1	1e-136	agamous-like MADS-box protein AGL80
TrEMBL	M8CME3	1e-137	M8CME3_AEGTA; Agamous-like MADS-box protein AGL80
STRING	EMT28627	1e-138	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-19	AGAMOUS-like 80