PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT28631

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 204aa MW: 22455.4 Da PI: 9.9786

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28631	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.8e-09	67	103	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky EMT28631 67 LFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 103 788899******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.3E-10	66	108	IPR009057	Homeodomain-like
CDD	cd00167	1.03E-6	66	104	No hit	No description
TIGRFAMs	TIGR01557	1.5E-10	66	106	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-6	67	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-6	67	102	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSYSRKHSAP SFFLQICLIL FAPRGGDRSC YHQRNPELLR CRLNPASCHN LSTSLELKLG 60 DSFSCRLFLL GLKKYGKGDW RNISRNFVQT RTPTQVASHA QKYFIRLSSG GGKDKRRSSI 120 HDITTVHLDD QPPSPSQSSM ITQSSAPAPS ATTGQFSLPA DTKQHGGANA PYNSPPSYGM 180 GLQDQGLQCG PLHDQLAANR SMLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200804.1	1e-95	transcription factor DIVARICATA-like
Refseq	XP_020200805.1	1e-95	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-33	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	M8CXT9	1e-149	M8CXT9_AEGTA; Uncharacterized protein
STRING	EMT28631	1e-150	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	2e-16	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]