PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28635
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 509aa    MW: 56728.3 Da    PI: 6.5699
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28635genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.6e-1124853399
              -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
              s  ++le+++gr+++vk+   k  gr++lt+GW++Fv+an+++e+  ++F + g+s+f  +v++f++
  EMT28635 24 SEPIKLETPDGRTYSVKF--FK-FGRITLTTGWRGFVDANHIEENNPMLFVYRGNSTF--KVQIFNS 85
              4469**************..44.46799************************999999..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.097186IPR003340B3 DNA binding domain
SMARTSM010190.0042586IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-14886IPR015300DNA-binding pseudobarrel domain
CDDcd100173.74E-11984No hitNo description
Gene3DG3DSA:2.40.330.102.1E-122087IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-92385IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-13146246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-12146246IPR015300DNA-binding pseudobarrel domain
CDDcd100179.78E-9151243No hitNo description
SMARTSM010190.011153245IPR003340B3 DNA binding domain
PROSITE profilePS508638.628154245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-11384505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-10391498IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-8394495No hitNo description
SMARTSM010190.013396497IPR003340B3 DNA binding domain
PROSITE profilePS508638.388396497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MLLGTTTCIP WEVSSQLRDM IPDSEPIKLE TPDGRTYSVK FFKFGRITLT TGWRGFVDAN  60
HIEENNPMLF VYRGNSTFKV QIFNSSGRDK FLPCSQPPCN HHVLNEQVVP HPGHVDSSAH  120
FGYTMLPGSF VTKAQDDKLL EWANTIKSEF PLFVAAMDES NVSLSDCHVY IPLSLVGQFK  180
EEVVKIVALD KSIYVVGAKK HNEDQIVLQS GWHRFVASQC IQQNDFLIFI IEGEARLKVL  240
VLDPSGSEKT FAMGNSSNAQ EKPPLPPTVT NQSSEDNELT DQSSDNELTD LSSDNELTDL  300
SSDYEVLGKD TTTSRREQRP LRSCRAKAEK MGSTSCPSTK SDHRHKAGNS NEAGIEAPMP  360
NKSYIVPQAG ATKLTVQQEE KVKEKVRAIG SEFPVFVKVM TAYDVSKMAH LAFCMEYASA  420
CRLPLEQTPL LLRLEGSNMR WSSALMIQQN NNVRRICSFW QDIVSQAGTK EGDILLVELA  480
GRSSRRLRMT VHLIRKSECS SSSCSQASS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170062.10.0B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBLM8BUD40.0M8BUD4_AEGTA; B3 domain-containing protein
STRINGEMT286350.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-09B3 family protein