PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28703
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 296aa    MW: 32185.4 Da    PI: 4.4545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28703genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-1375137655
               HHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksLq 55 
                 +Er RR+++N+++ +Lr+++P+               ++++  ++Ka+i + A+eYI++Lq
  EMT28703  75 ILMERDRRRKLNEKLYTLRSVVPNiTKvsarisagilpaRPSAWQMDKASIIKDAIEYIQQLQ 137
               579*********************666***********6666666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1769136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1573151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-1173141No hitNo description
PfamPF000101.5E-1074137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1675152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-1375142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.581218294IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDPDMGENFA YYWETQRYLE SEELVDSIFV GATEDAISYY DSSSPDGSHS SSTPMGAAMP  60
GVGMGMGGTG ANKNILMERD RRRKLNEKLY TLRSVVPNIT KVSARISAGI LPARPSAWQM  120
DKASIIKDAI EYIQQLQAEE RQMEAEVSAL ESATGAEDDC DGGLSVDQVS SAQRKKVKRA  180
LSVSSMNDAL LAAAATVASP PVEVLELRVS EVSEKVLVVS VTCSKQRDAM TKVCRALEEL  240
RLRVITANIT SVSGCLMHTL FVEVDEMDRF EMKETVEAAL SQLDSTGSPP LSSMSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509170.0AK250917.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98c12, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160196.11e-168transcription factor bHLH35-like
TrEMBLM8C3R10.0M8C3R1_AEGTA; Uncharacterized protein
STRINGEMT287030.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-37bHLH family protein