PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29255
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WOX
Protein Properties Length: 235aa    MW: 25483 Da    PI: 10.0932
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29255genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2093152357
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               +R+++++eq+++Le+l++   r+p+ +++e+++++l    +++ ++V++WFqN++a+e++
  EMT29255  93 TRWNPSAEQIKVLEALYRGgMRTPNSAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 152
               8*****************99**************************************97 PP
2Wus_type_Homeobox114.94e-3792154365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq
           EMT29255  92 TTRWNPSAEQIKVLEALYRGGMRTPNSAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 154
                        69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-890157IPR001356Homeobox domain
SuperFamilySSF466895.13E-1392158IPR009057Homeodomain-like
CDDcd000861.32E-693154No hitNo description
PfamPF000468.9E-1893152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-893152IPR009057Homeodomain-like
PROSITE profilePS5007110.15598153IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRVHHLHAPS YLEKAASASP SPATAPSTSP PSALFPFGAF QCLRPLAPKI SLPDQPKKLV  60
APPDVLGRVR NATKLLSCTV RNHTVQVPVG GTTRWNPSAE QIKVLEALYR GGMRTPNSAQ  120
IERITEELGR HGRIEGKNVF YWFQNHKARE RQKQKRAALL TLSTLDSSSL PATATKDGAG  180
DKKEDCDEAT NSCKRRCMKW SAGHGDAAAE VAAPDGCTDN VTLELFPLRP QGKAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420071e-81AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066351e-81AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066921e-81AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149601e-81AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-81CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361591e-81JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161616.11e-175WUSCHEL-related homeobox 4-like
SwissprotQ25AM21e-99WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-99WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A453D7W41e-174A0A453D7W4_AEGTS; Uncharacterized protein
TrEMBLM8BW891e-174M8BW89_AEGTA; WUSCHEL-related homeobox 4
STRINGEMT292551e-175(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-34WUSCHEL related homeobox 4