PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29383
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24211.5 Da    PI: 10.6593
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29383genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-1960113356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               k++++t+eq++ Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  EMT29383  60 KKRRLTDEQVHGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 113
               45689***********************************************99 PP
2HD-ZIP_I/II112.52.7e-3660147289
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  kkrrl++eqv+ LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k +E+++++Lk+a+da + ++++Le+e  ++++
     EMT29383  60 KKRRLTDEQVHGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLMEEEFAKLKHAHDAAVLHKCHLENESIQIKA 147
                  9*********************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.31E-1753114IPR009057Homeodomain-like
PROSITE profilePS5007116.00155115IPR001356Homeobox domain
SMARTSM003892.8E-1758119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-1860113IPR009057Homeodomain-like
CDDcd000862.31E-1360115No hitNo description
PfamPF000464.4E-1660113IPR001356Homeobox domain
PRINTSPR000311.0E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.0E-595111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDKQQVFGSS YVDMPFFAAN GAATAQGESR PRARRRRRRA ARCGGGDGDG GEMDGGGDPK  60
KRRLTDEQVH GLELSFREER KLETGRKVHL AAELGLDPKQ VAVWFQNRRA RHKSKLMEEE  120
FAKLKHAHDA AVLHKCHLEN ESIQIKAHAA ATRRRWWAFR SRVEHPLDQE PTVHEVALQI  180
VEPPTESEMT PKRKRRRPVV ATFHSSLLAT CLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12938RPRARRRRRR
23341RRRRRRAAR
3190197PKRKRRRP
4191196KRKRRR
5192196RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4902341e-152AB490234.1 Hordeum vulgare subsp. vulgare HvHox2 mRNA for homeodomain leucine zipper protein class 1, complete cds.
GenBankAK3684641e-152AK368464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2074A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155462.14e-73homeobox-leucine zipper protein HOX14-like
TrEMBLM8C5R21e-155M8C5R2_AEGTA; Homeobox-leucine zipper protein HOX14
STRINGEMT293831e-156(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-35homeobox protein 40