PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29487
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family E2F/DP
Protein Properties Length: 329aa    MW: 35294.6 Da    PI: 9.2281
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29487genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.32.6e-2393160371
   E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..dvknkrRRiYDilNVLealnliekkekneirwkg 71 
               +++Lr++++k   ++ek+e  g++t+ne +  L+ +  d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  EMT29487  93 NRGLRQFSMK---VCEKVEGkGRTTYNEFSYCLYDQqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 160
               689*******...*****999************88899************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.5E-1062329IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.9E-3388166IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2391160IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-2194160IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.01E-1794161IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144589.91E-42165268IPR014889Transcription factor DP, C-terminal
SMARTSM011387.8E-76167327IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-41167277No hitNo description
PfamPF087814.7E-41168299IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVSSARSSGG MAHSASNSAG SAGSPSGGIG PGNGVAAAAA TTSASASTPA SGSTVARRLN  60
DLEIQGDDAP SSQPAASKKK KKGTRVVGPD KGNRGLRQFS MKVCEKVEGK GRTTYNEFSY  120
CLYDQQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTSLSDID KLKTEVIGLK  180
GRIDKKSAYL QELQDQYVGL QNLVERNEQL YGSGDAPSGG VALPFILVQT RPHATVEVEI  240
SEDMQLVHFD FNSTPFELHD DSFVLKAMGF SGKEETDGTV ALVANAVECS SASNVYGHRS  300
PQPARPNGIR PRTSPPIPGI LKGRVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-2890165693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163241.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-120DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM8CPN90.0M8CPN9_AEGTA; Transcription factor Dp
STRINGEMT294870.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-114Transcription factor DP