PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29543
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 291aa    MW: 31960.2 Da    PI: 4.8696
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29543genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.76.8e-32211132103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ l++w +++nsf+v+d   f++ +Lp +Fkh nf+SFvRQLn YgF+kv+ ++         weF+h+sF  g+k+ll +i 
      EMT29543  21 FVAKTYQLVSDPRTDALVRWGRDNNSFLVTDVAGFSQLLLPCFFKHGNFSSFVRQLNSYGFRKVHPDR---------WEFAHESFLSGQKHLLPRIV 108
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
      EMT29543 109 RRKKK 113
                   *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-4717110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3119110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-162144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2721110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-165971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-167284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDGLHTELAL GLIGELETAP FVAKTYQLVS DPRTDALVRW GRDNNSFLVT DVAGFSQLLL  60
PCFFKHGNFS SFVRQLNSYG FRKVHPDRWE FAHESFLSGQ KHLLPRIVRR KKKRGEASCS  120
SLVGGGEQHV VANIGEEVEE EEDDEGREAL LEEATELRSD QLMPLLARLD EDPNATSLHL  180
LQQAAEKKLQ RMQLPTRDFA SFPIVPPLHP APSPLLALGD TAMGGARVGQ WAESMPLKLP  240
TFEEPSASSG VQQVPEFEGG GRDSGSGMGI TNSGTAVEIP FPFCLLGQCF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22311011129Heat shock factor protein 1
5d5v_B2e-22311011129Heat shock factor protein 1
5d5v_D2e-22311011129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-173HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195270.10.0heat stress transcription factor C-1a-like
SwissprotQ6VBA42e-94HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLM8C6540.0M8C654_AEGTA; Heat stress transcription factor C-1a
STRINGEMT295430.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-45heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]