PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29641
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 1248aa    MW: 141606 Da    PI: 7.6065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29641genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.63.7e-2611281219191
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
        B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91  
                f+kv t sdv+k++rlv+p++fae++        +e++  l +ed+ g+ W+++++y+++s++y++t GW+ Fv++++L +gD+v F++ g   ++
  EMT29641 1128 FDKVVTASDVGKLNRLVVPNQFAEKYfpldvA-ANEKGLLLNFEDRGGKLWNFRYSYSNNSQSYIMTMGWSAFVRDHHLATGDTVSFYRAG---TR 1219
                89***************************963.3457789************************************************544...44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.24E-55285564IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3008.9E-19301476IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.5E-51319592IPR002182NB-ARC
PRINTSPR003641.8E-11324339No hitNo description
PRINTSPR003641.8E-11399413No hitNo description
PRINTSPR003641.8E-11496510No hitNo description
SuperFamilySSF520477.85E-17544566No hitNo description
SuperFamilySSF520477.85E-17683981No hitNo description
Gene3DG3DSA:3.80.10.101.7E-7690816IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.8E-11742758No hitNo description
Gene3DG3DSA:3.80.10.101.7E-7887981IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.40.330.102.6E-3511241230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-2211261215No hitNo description
SuperFamilySSF1019361.83E-2511261221IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-2311281218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.98711281229IPR003340B3 DNA binding domain
SMARTSM010199.5E-1911281230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1248 aa     Download sequence    Send to blast
MDLTEKDKEE PARKRRETGQ VLDPVRIVGK KRRNNDDGIL EEDCKNVLLD DPTTATVSDP  60
VIESSAKNEV EQSGAQLLVL EEACLFTSSD ISTLFDGSVS SSLGSMRPLG EKLDKLLAPA  120
QEYYRRLPKR TKEGMHLLKD DVEVISSYLD ELSEVEDPPP MAMCWMNEAR DLSYDMEDYI  180
DSLLFVPPDR FFKKKKKKGR RKKMMIKKML KWYKQVAFTA QVSEHGIMTS KIIHVNVPRL  240
PSKPKIAETI SEFRIYVQEA IERHNRYKLH CCSNLRRRTF LSTGRMLPMP YEETDDHVVI  300
DGQMNEFINS LAANDAADQQ QLKVVSVLGT GCLGKTTLAK VLYNRIGMQF DCRAFIRVSK  360
KPDMKRLLRD LFSQLHQKKQ PLPTNCNELG ISDINIRKHL QDKRYLIVID DLWDASVWDI  420
IKSAFPKGNR GSRIIITTQI EDVASTCCCD HSEHVFEMKP LDDDHSRKLF FSRLFGSESD  480
CPEELKQVSN EIVDICGGLP LATINIASHL ANQETEVSMD LLAYTRDALR SYLWSNSTSE  540
RTKQVLNLSY NNLPHYLKTC LLYLNMHPEG SIICKDDAVK QWVVEGFIAP RKGKEQGQDW  600
MEKVAGIYFD ELIDRRFIQP LYINYNNKSA EENFIVVVDY NRKNIALTHK VRRLSLIFGD  660
GKYAKTPENI TKSQVRSLRY FGLFKCMPCI REFKVLRVLN LILSGHCGDY DPIDLTGISE  720
LFQLRYLKIA SDVCIKLPNS MRGLKCLETL DVMDATRVTA VPWDIIQLPH LLHLILPVDT  780
NLLDLVGNLS DSVIHQWSLG KLNCLQDLHL TFSSTSPDDH LETSMEVLAY LIGGHGNLKT  840
VVIAHGSLVE NTVVPGASKV IPPWYRMAPP PLLQRLEFSP HSCCIFSRIP PWIEKHGNLC  900
ILKIPLRELK MICIDTLGGL CALTALSLYV ETPPIQKIIF DKAVGFSVLK HFKLRFTTGI  960
ACLKFEEDAM PNLLKLKLVF NAIPPMGQPF FFRMGQVRQK VQHEHGTAVI SIEHMPGLRE  1020
ISTKFGGTAS DLEYASRTVV SNHPSNPTIK MQLVGYSSNV DRSTKQKQQP DDILEEQPDG  1080
EYDKRLERSA DQRISTSLES NLRLDVPEIT PTLVQITGGG DDVREHMFDK VVTASDVGKL  1140
NRLVVPNQFA EKYFPLDVAA NEKGLLLNFE DRGGKLWNFR YSYSNNSQSY IMTMGWSAFV  1200
RDHHLATGDT VSFYRAGTRL FIDCRVRGQI LAPVTQAVMP ASASPALK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-41112412304116B3 domain-containing transcription factor NGA1
5os9_B2e-41112412304116B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11332KRRETGQVLDPVRIVGKKRR
2192200KKKKKKGRR
3193202KKKKKGRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199675.10.0putative disease resistance RPP13-like protein 2
TrEMBLM8D0F00.0M8D0F0_AEGTA; B3 domain-containing protein
STRINGEMT296410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-41B3 family protein