PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29840
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 245aa    MW: 26572 Da    PI: 7.1009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29840genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed  lv  ++++G  +W++ ++  g+ R++k+c++rw +yl
         EMT29840 14 RGPWTAKEDMTLVAHIEKHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding54.33.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+e +++++++lG++ W+tIa++++ gRt++++k+ w+++l
         EMT29840  67 RGNFTSDEEEAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129412.792961IPR017930Myb domain
SuperFamilySSF466897.11E-3011108IPR009057Homeodomain-like
SMARTSM007175.4E-101363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
CDDcd001671.65E-101661No hitNo description
PROSITE profilePS5129424.37762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007172.3E-1466114IPR001005SANT/Myb domain
PfamPF002494.1E-1567112IPR001005SANT/Myb domain
CDDcd001672.25E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVRAPCCEKL GLKRGPWTAK EDMTLVAHIE KHGHSNWRAL PKQAGLLRCG KSCRLRWINY  60
LCPDIKRGNF TSDEEEAIIQ LHAMLGNRWS TIAARLPGRT DNEIKNVWHT HLKKRLESSS  120
KPSGQAAPKR KAKKPAVAAS ALEGPTSADL RAGVVVTGAV PLDVAGAVPL DVNTGSSSSE  180
SEEFQIDDSF WSETLAMSVD SSGSGMETGD TFGADSLSPS SSNNEMDFWV TLFMQAGDMQ  240
SLSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686570.0AK368657.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169006.11e-150myb-related protein Myb4-like
SwissprotQ6K1S69e-96MYB30_ORYSJ; Transcription factor MYB30
TrEMBLM8BXX70.0M8BXX7_AEGTA; Myb-related protein Myb4
STRINGEMT298400.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-74myb domain protein 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]