PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30013
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YB
Protein Properties Length: 144aa    MW: 15716.6 Da    PI: 4.8318
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB445.5e-14401092796
     NF-YB  27 iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
               + kda     e +  fi ++++ a+d c+  kr+tin++d++ al ++ f ++vepl++ l+++r  +++
  EMT30013  40 VNKDAMAAFAESARIFIHYLSATANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALEEFRSRNAA 109
               78999************************************************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.5E-3110138IPR009072Histone-fold
SuperFamilySSF471131.15E-2410133IPR009072Histone-fold
PfamPF008082.9E-84084IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTEAWGEEPP KAIVRRLVKD KLARAASGGE GAEGGAEVIV NKDAMAAFAE SARIFIHYLS  60
ATANDVCKDG KRQTINAEDV FKALDEIEFP EFVEPLRTAL EEFRSRNAAR KPASGKKQSE  120
KKRKLEAVPE EQNGAAVEAN ADED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3710681e-168AK371068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2124A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188630.16e-82neurofilament heavy polypeptide-like isoform X1
RefseqXP_020188631.13e-82DNA polymerase epsilon subunit 3-like isoform X2
TrEMBLM8C7G93e-98M8C7G9_AEGTA; DNA polymerase epsilon subunit 3
STRINGEMT300135e-99(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-32nuclear factor Y, subunit B11