PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30068
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 540aa    MW: 59308 Da    PI: 6.4528
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30068genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.9e-19297331135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  EMT30068 297 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 331
               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-13290345No hitNo description
SMARTSM004012.5E-16291341IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466291327IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-15295329IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-14296338No hitNo description
PfamPF003204.0E-17297331IPR000679Zinc finger, GATA-type
PROSITE patternPS003440297322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MPSYAHHHSS LDERMDALKG SSREEETPDE AAAEAPAAWG FAERDGFSVE DLLDLEEFCE  60
PDRDGADEPE EAPAAAVKEE KLNDGPNQSV VSYELAPPAP PAPEIVALPA HDVEEELEWV  120
SRIMDDSLSE LPPQPAPPAS MMASLAPRPP QHRLPQRHPQ DGAYRALPSM SDPMRTPTIC  180
ALSTEALVPV KAKRSKRSRA SGWSLSGPAP DSTSSSSTTT TSSCSSSASF SPYFLLDTPH  240
FGASELMEEY NILPPPPKKS KHGKSSKQKA KKRGRKPKNL PAPSSAMEAA TQSDRRCSHC  300
GVQKTPQWRA GPEGAKTLCN ACGVRYKSGR LLPEYRPACS PTYYVPCSFR AHLARYIEEC  360
RALAIRRGDE DTDLALQCNE GYLYGVLFSH GRVRSKFHGP SWERLVSDYG VRPRDIMTIR  420
LEHYGTRIGI DFYRVGRGDA LSPLPSVVIP GIVVRSLKEF VTFPRTGVLT LEVTLESGDD  480
DIYVSTPCSY FIGLGSRMVF KQEGFSDFLQ ASSIEVNSLV LITSKKRDGR LVVIFSLLPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588220.0AK358822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168016.10.0GATA transcription factor 5-like
TrEMBLM8C7L90.0M8C7L9_AEGTA; GATA transcription factor 13
STRINGEMT300680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.12e-28GATA transcription factor 6