PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30375
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YB
Protein Properties Length: 114aa    MW: 12204 Da    PI: 5.7667
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30375genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB68.51.2e-2122109292
     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
               +e+d f+P+a++srim kv+  +++i + a   v+e +sefi+  +s  sd c+r kr +++ ddll  +a+ Gf+d++eplk+ l+kyr 
  EMT30375  22 EERDVFVPVADISRIMGKVILPDGRIDEGA---VRELASEFITRRASGESDGCKRAKREAMTVDDLLSEMAKQGFQDHIEPLKACLHKYRV 109
               5899**********************8765...99*******************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-1523108IPR009072Histone-fold
SuperFamilySSF471137.54E-925109IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MAGPPASPSG DGGIPTAGGI GEERDVFVPV ADISRIMGKV ILPDGRIDEG AVRELASEFI  60
TRRASGESDG CKRAKREAMT VDDLLSEMAK QGFQDHIEPL KACLHKYRVA RILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-1623108896NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485781e-116AK248578.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97f03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155429.12e-26putative F-box/LRR-repeat protein 23
TrEMBLM8BZE16e-76M8BZE1_AEGTA; Nuclear transcription factor Y subunit B-1
STRINGEMT303751e-76(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP548710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.64e-23nuclear factor Y, subunit B1