PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30471

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 128aa MW: 13341.8 Da PI: 5.1337

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30471	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	132.3	5.4e-41	2	124	268	374
GRAS 268 fdsleak...............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 fdsle + +p+++ +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF++v+l+++a+kqa++ll+ ++ +dgy+ve EMT30471 2 FDSLEGGssgggpsevssgaaaAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAgGDGYKVE 102 555555445555555555555589999************************************************************************ PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e++g+l+lgW++rpL+++SaWr EMT30471 103 EKEGCLTLGWHTRPLIATSAWR 124 *******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.753	1	103	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-38	2	124	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MFDSLEGGSS GGGPSEVSSG AAAAPAAAGT DQVMSEVYLG RQICNVVACE GAERTERHET 60 LGQWRNRLGN AGFETVHLGS NAYKQASTLL ALFAGGDGYK VEEKEGCLTL GWHTRPLIAT 120 SAWRLAGP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ242531	0.0	AJ242531.1 Triticum aestivum rht-D1a gene for gibberellin response modulator.
GenBank	FR668590	0.0	FR668590.1 Triticum aestivum rht-D1 gene, allele e.
GenBank	FR668591	0.0	FR668591.1 Triticum aestivum rht-D1 gene, allele f.
GenBank	FR668592	0.0	FR668592.1 Triticum aestivum rht-D1 gene, allele h.
GenBank	FR668593	0.0	FR668593.1 Triticum aestivum rht-D1 gene, allele i.
GenBank	FR668594	0.0	FR668594.1 Triticum aestivum rht-D1 gene, allele g.
GenBank	GQ451334	0.0	GQ451334.1 Triticum aestivum cultivar Xiaoyan 54 DELLA protein RHT-D1 gene, complete cds.
GenBank	HE585643	0.0	HE585643.1 Triticum aestivum Rht-D1 gene for DELLA protein, allele Rht-D1a.
GenBank	HQ435325	0.0	HQ435325.1 Triticum aestivum clone BAC 1J9 Tmemb_185A domain-containing protein (1J9.1), EamA domain-containing protein (1J9.2), and Rht-D1b (Rht-D1b) genes, complete cds, complete sequence.
GenBank	JF930281	0.0	JF930281.1 Triticum aestivum DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614639	0.0	KC614639.1 Triticum aestivum cultivar Avalon bio-material NIAB EW2 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614640	0.0	KC614640.1 Triticum aestivum cultivar DC147U bio-material INRA:08287 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614641	0.0	KC614641.1 Triticum aestivum cultivar Gaines bio-material JIC:814 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614642	0.0	KC614642.1 Triticum aestivum cultivar Hobbit 'Sib' bio-material NIAB EW7 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614643	0.0	KC614643.1 Triticum aestivum cultivar N67M2 bio-material INRA:05096 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614644	0.0	KC614644.1 Triticum aestivum cultivar Norin 10 bio-material USDA:PI156641 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614645	0.0	KC614645.1 Triticum aestivum cultivar Norin 10/Brevor-14 bio-material USDA:Cltr13253 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614646	0.0	KC614646.1 Triticum aestivum cultivar Sonora 64 bio-material JIC:613 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC614647	0.0	KC614647.1 Triticum aestivum cultivar Xi19 bio-material NIAB EW11-3 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	KC767927	0.0	KC767927.1 Triticum aestivum cultivar Wangshuibai DELLA (Rht-D1) gene, Rht-D1a allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147810.1	1e-85	DELLA protein RHT-1
Swissprot	Q9ST59	1e-86	RHT1_WHEAT; DELLA protein RHT-1
TrEMBL	A0A453H6A5	8e-85	A0A453H6A5_AEGTS; Uncharacterized protein
TrEMBL	I3NM21	6e-85	I3NM21_WHEAT; Rht-D1b
TrEMBL	I7HKX2	2e-84	I7HKX2_WHEAT; RHT-D1 protein
TrEMBL	I7HZD8	3e-84	I7HZD8_WHEAT; RHT-D1 protein
TrEMBL	M8D2J3	2e-88	M8D2J3_AEGTA; Uncharacterized protein
TrEMBL	M9PRW6	2e-84	M9PRW6_WHEAT; DELLA protein
STRING	EMT30471	3e-89	(Aegilops tauschii)
STRING	Traes_4DS_ADBA6E30A.1	8e-87	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	3e-52	GRAS family protein

Publications ? help Back to Top
Wilhelm EP, et al. Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat. Theor. Appl. Genet., 2013. 126(5): p. 1321-36 [PMID:23381809]