PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30490

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

SRS

Protein Properties

Length: 139aa MW: 14312.7 Da PI: 5.88

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30490	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	78.9	1.3e-24	4	57	101	154
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P+evsseavfrcvr++ vd++e+elaYqt+vsigGh fkGiL+d G+++ EMT30490 4 VAERFPREVSSEAVFRCVRLGPVDQAEAELAYQTTVSIGGHGFKGILHDVGPSN 57 5688***********************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.8E-21	5	56	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	3.7E-22	7	55	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MVTVAERFPR EVSSEAVFRC VRLGPVDQAE AELAYQTTVS IGGHGFKGIL HDVGPSNAHA 60 QLQAAAGGSG GGGGDYQFRL TGDVSPPSTG AEAGDAGGGN NHNIVVSSAV VMDPYPTPGL 120 YGSFPATTPF FHGHPYQRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241285	1e-62	AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
GenBank	AP005314	1e-62	AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01.
GenBank	AP005567	1e-62	AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07.
GenBank	AP014965	1e-62	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-62	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192267.1	4e-95	protein SHI RELATED SEQUENCE 1-like
TrEMBL	M8BZP1	1e-95	M8BZP1_AEGTA; Uncharacterized protein
STRING	EMT30490	2e-96	(Aegilops tauschii)
STRING	Traes_5BL_06A206038.1	1e-94	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18120.1	1e-17	SHI-related sequence 4