PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30626

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

SBP

Protein Properties

Length: 141aa MW: 14342.2 Da PI: 10.5792

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30626	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	28.6	3.7e-09	81	102	2	23
-SSTT-----TT--HHHHHTT- CS SBP 2 CqvegCeadlseakeyhrrhkv 23 C vegC+adls+++eyhrrhkv EMT30626 81 CSVEGCTADLSRCREYHRRHKV 102 *********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.2E-9	72	102	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-8	79	102	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MPSWDLGTVV APSGGGGGGG GGGGALDLKL GAPTSWRPVP AAAAAAAAVV SVQQQQHPPS 60 AVAAPAKRAR AGQGQQTVPP CSVEGCTADL SRCREYHRRH KVPFARGVRR GEEELQEAAR 120 RPQPAPPEAA AGSPQSCRLV R

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	9e-94	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBank	KF447884	9e-94	KF447884.1 Triticum aestivum squamosa promoter-binding-like protein 23 (SPL23) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178580.1	2e-63	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	5e-23	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	M8D2Y0	3e-92	M8D2Y0_AEGTA; Squamosa promoter-binding-like protein 2
STRING	EMT30626	5e-93	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-08	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]