PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30658

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Dof

Protein Properties

Length: 205aa MW: 20775.4 Da PI: 10.5269

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30658	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	70	3.7e-22	38	73	27	62
zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Pr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ EMT30658 38 GAPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 73 57*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	15.323	17	71	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-9	36	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-16	39	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAGAAGGLLR LRWCSQPPLL ARGGAARSRP EPVAVALGAP RHFCKACKRY WTRGGTLRNV 60 PVGGGCRKNK RSRSSNGSGG RPGSCAVVAS SNAAAGGIAS STSMSLPPPG SLSSALGLHG 120 HGSSSLASLL LGSGASGGDH LGLFHAMQSV VSDATAYEMH QQHQTQVDQL LGLGYGAGDA 180 NGSQIHIKPW QQHLQDGAGG LFDGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368979	0.0	AK368979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083D03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159095.1	1e-115	dof zinc finger protein DOF5.8-like
TrEMBL	M8C976	1e-143	M8C976_AEGTA; Dof zinc finger protein
STRING	EMT30658	1e-144	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-12	Dof family protein