PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31299
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 469aa    MW: 50942.8 Da    PI: 9.5306
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31299genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41181257278
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
               CqvegC++dls++k+yhr+h+vCe hskap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
  EMT31299 181 CQVEGCKVDLSSVKDYHRKHRVCELHSKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 257
               **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33173242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.616178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-39180260IPR004333Transcription factor, SBP-box
PfamPF031109.7E-32181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEWNQRSSVL WDWENFPPIG ENPKNAMQAD PRFAAVAANQ RSEPPLHSSG GSGTFSSSSE  60
MGYGSSKSSM SASIDSSNRA GNNMEFRFAP VKNPDRNTSK NTELGKVDNT RTGTSPSPVV  120
AVSSGEPVIG LKLGKRTYFE DVCGGQNVKS SPSGAASAPN KSPALGKKAK AEQQKPHNSY  180
CQVEGCKVDL SSVKDYHRKH RVCELHSKAP KVVVAGLERR FCQQCSRFHA LAEFDQKKRS  240
CRRRLNDHNS RRRKPQPEAI SFSSSRMSTM FYDARQQPNF LFGQAPYVQM RSCGSSSWDD  300
PGGFKVTHTK APWLKPTTAA GVHGIHLSSQ QMSDNIMPHG AHHGFDGFMA FKGTCTKFPN  360
QGVQASAVAS DSSGAPDLQH ALSLLSSNPV GAANLQPSPQ MHSGVAAIAG APNPAMHALG  420
SSTGLWLDGS QPLDDHPRFQ VFERLGDHDS ELQLPKPSYD HASHFDRMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKRSCRRRLNDHNSRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478850.0KF447885.1 Triticum aestivum squamosa promoter-binding-like protein 3 (SPL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187264.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187265.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187266.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q60.0SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z80.0SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLM8CAH60.0M8CAH6_AEGTA; Squamosa promoter-binding-like protein 3
STRINGEMT312990.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-45squamosa promoter binding protein-like 2