PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31332
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family RAV
Protein Properties Length: 333aa    MW: 36415.1 Da    PI: 10.1442
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31332genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.34.9e-1060106153
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
               s++kGV   + +grW ++I++      r +r++lg+f   + Aa+a+++a +++
  EMT31332  60 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFADQDLAARAYDEAELAF 106
               689***9788.8********9......44*********************8875 PP
2B394.47.8e-30154249187
               EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
               f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ +  
  EMT31332 154 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDSIVFSCSAY 249
               89*************************99877766444458999***********************************************96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-1060107IPR016177DNA-binding domain
PfamPF008473.7E-560105IPR001471AP2/ERF domain
CDDcd000184.33E-1560106No hitNo description
SMARTSM003808.4E-1161114IPR001471AP2/ERF domain
PROSITE profilePS5103215.07961119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1361110IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.6E-37149264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-29151257IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-28152244No hitNo description
SMARTSM010195.0E-23154262IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662154263IPR003340B3 DNA binding domain
PfamPF023621.5E-27154251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGVEILSSTV EHYSQYSSSA STATTESGAA GRSPMALSLP VAIADESVTS RSTSAQLALS  60
RFKGVVPQPN GRWGSQIYER HARVWLGTFA DQDLAARAYD EAELAFLAAH SKAEIVDMLR  120
KHTYADELRQ GLRRGRGMGT RAQPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF  180
PLKRTPETTT TTGNGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF VREKGLAAGD  240
SIVFSCSAYG QEKQFFINCK KNTTVNGGKS ASPLPVVETA KGEQVRVVRL FGVDIAGVKR  300
GRAATAEHGP PELFKRQCVA HGQHSPALGA FVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4715126011115DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-128Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLM8CUQ60.0M8CUQ6_AEGTA; AP2/ERF and B3 domain-containing protein
STRINGEMT313320.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-89related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]