PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31506
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 379aa    MW: 41667.8 Da    PI: 8.8583
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31506genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP120.67.5e-38192262171
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT---- CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhne 71 
               +Cq+egC+adls ak+yhrrhkvCe h+ka++v++sg++qrfCqqCsrfh l efDe+krsCr+rL +hn+
  EMT31506 192 RCQAEGCKADLSAAKHYHRRHKVCEYHAKAATVAASGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTGHNR 262
               6*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-34186254IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.923190267IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-35191268IPR004333Transcription factor, SBP-box
PfamPF031101.1E-28193262IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAPVSDMTDF GYAPMQSYPN FEPAGMVMPG ARQPPFQHHH LYDSLDFNAA AFSFQDPVAL  60
FSSGSAVSNQ LQQPFLQTQV SMPTMASSSL LQAPMMTLPG MLTSSSASPV DAYTFGGGGS  120
AGFLKREEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRFGG AGAMGMLGLG  180
LGAAAHQHQT PRCQAEGCKA DLSAAKHYHR RHKVCEYHAK AATVAASGKQ QRFCQQCSRF  240
HVLAEFDEAK RSCRKRLTGH NRAAESPPAR RARTRRRLPR RQTLASPAHT PAITGFWRCT  300
WLQHTPQGPD EQEDEQQQQQ HFMMTSLVQS HRQQQQQGDR GNILSCSTTS PSDQRRHQND  360
GDSCCNGNSM QHFFEVEFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-281932611179squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274281RRRLPRRQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478820.0KF447882.1 Triticum aestivum squamosa promoter-binding-like protein 21 (SPL21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149100.11e-173squamosa promoter-binding-like protein 5
SwissprotQ0E3F85e-59SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLM8D5820.0M8D582_AEGTA; Squamosa promoter-binding-like protein 5
STRINGEMT315060.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-38squamosa promoter binding protein-like 8