PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31843
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 81aa    MW: 8594.39 Da    PI: 7.5155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31843genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-052446123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ C++ F++   L  H+++H
  EMT31843 24 HECSFCNRGFTNAQALGGHMNVH 46
              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-72251No hitNo description
PfamPF139121.4E-62348IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-52450IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00982446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.512451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MEGGGSGKVG SPEDAAARRA REYHECSFCN RGFTNAQALG GHMNVHRDER RRQAAAPPAD  60
GGGSQKKGPG SSEELDLELR L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160069.17e-24transcriptional regulator TAC1-like
TrEMBLA0A3B6TE962e-51A0A3B6TE96_WHEAT; Uncharacterized protein
TrEMBLA0A453QUJ32e-51A0A453QUJ3_AEGTS; Uncharacterized protein
TrEMBLM8CCH92e-51M8CCH9_AEGTA; Uncharacterized protein
STRINGEMT318433e-52(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-12C2H2 family protein