PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31992
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 94aa    MW: 10637.2 Da    PI: 8.2856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31992genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113153123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C++Cg  F     L  H+r+H
  EMT31992 31 HQCHICGLGFEMGQALGGHMRRH 53
              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.38E-72756No hitNo description
Gene3DG3DSA:3.30.160.603.1E-42856IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-103156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7643158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MDHLRGRHGL ELGVGVARAI KERKKREEKQ HQCHICGLGF EMGQALGGHM RRHREEMAPR  60
RADDRWVALL PDQEVAGQQA AADQPPPVLL ELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591612e-41AK359161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090O23.
GenBankAK3666282e-41AK366628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198432.13e-61zinc finger protein ZAT12-like
TrEMBLA0A3B6N0M36e-60A0A3B6N0M3_WHEAT; Uncharacterized protein
TrEMBLA0A453M9L96e-60A0A453M9L9_AEGTS; Uncharacterized protein
TrEMBLM8CWD31e-60M8CWD3_AEGTA; Uncharacterized protein
STRINGEMT319922e-61(Aegilops tauschii)
STRINGTraes_5DL_90F570468.71e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-10C2H2 family protein