PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31996
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 133aa    MW: 14568.7 Da    PI: 9.9282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31996genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164163123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+sF +   L  H  +H
  EMT31996 41 FVCKTCGRSFASFQALGGHRTSH 63
              89*********999998888777 PP
2zf-C2H217.89.5e-0695117123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++Cg+ F +   L  H+r+H
  EMT31996  95 HQCHICGQGFETGQALGGHMRRH 117
               79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-84063No hitNo description
PROSITE profilePS5015711.3024168IPR007087Zinc finger, C2H2
PfamPF139121.6E-104164IPR007087Zinc finger, C2H2
SMARTSM003550.164163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576675.01E-890117No hitNo description
PfamPF139129.8E-1194120IPR007087Zinc finger, C2H2
SMARTSM003550.01595117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38895122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTKHQRAEAA DQHVVSLALS LCLGAVADRS KKMRRAGRDQ FVCKTCGRSF ASFQALGGHR  60
TSHLRDRNGL ALALTTGDQY CSVKPKSATD QKQAHQCHIC GQGFETGQAL GGHMRRHREE  120
VAQALPVLLE LFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654826e-98AK365482.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198427.12e-93zinc finger protein ZAT8-like
SwissprotQ424536e-18ZAT7_ARATH; Zinc finger protein ZAT7
SwissprotQ681X41e-17ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A3B6N0M85e-92A0A3B6N0M8_WHEAT; Uncharacterized protein
TrEMBLA0A453M9R95e-92A0A453M9R9_AEGTS; Uncharacterized protein
TrEMBLM8D6E75e-92M8D6E7_AEGTA; Zinc finger protein 1
STRINGEMT319968e-93(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.13e-20C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]