PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31997
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 133aa    MW: 14319.4 Da    PI: 10.4776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31997genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144264123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+sF++   L  H  +H
  EMT31997 42 FVCKTCGRSFPSFQALGGHRTSH 64
              89**********99998888777 PP
2zf-C2H217.51.1e-0595117123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++Cg+ F +   L  H+r+H
  EMT31997  95 HRCHICGQGFETGQALGGHMRRH 117
               79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.5E-841117No hitNo description
PROSITE profilePS5015710.4084269IPR007087Zinc finger, C2H2
PfamPF139121.4E-114266IPR007087Zinc finger, C2H2
SMARTSM003550.0864264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139121.2E-1095120IPR007087Zinc finger, C2H2
SMARTSM003550.01895117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.61695122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTKHQRAAAD QAVSLSLSLS LGVVADINKK MRRATAASGD QFVCKTCGRS FPSFQALGGH  60
RTSHLRGRHG LTLALTAGGQ CYSVKPKSTD QKPEHRCHIC GQGFETGQAL GGHMRRHRDE  120
AAQAPPVLLE LFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508954e-99AK250895.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100e15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198426.16e-94zinc finger protein ZAT11-like
TrEMBLA0A453M9G61e-92A0A453M9G6_AEGTS; Uncharacterized protein
TrEMBLM8CWD71e-92M8CWD7_AEGTA; Zinc finger protein 1
STRINGEMT319972e-93(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-21C2H2 family protein