PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32159
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YC
Protein Properties Length: 117aa    MW: 12605.4 Da    PI: 6.9564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32159genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC99.42.6e-31258640101
     NF-YC  40 saeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdflvdivprde 
  EMT32159  25 PAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEA 86 
               59**********************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-192283IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-242483IPR009072Histone-fold
PfamPF008088.8E-102668IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MASHATGKRT ARTTSLPGKP LGVTPAEAPV VFARACEMFI LELTHRGWAH AEENKRRTLQ  60
KSDIAAAIAR TEVFDFLVDI VPRDEAKDAE AAVAAGMPHP AAGMPAADMG YYYVPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3126833895NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15561RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614941e-137AK361494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141P02.
GenBankAK3722951e-137AK372295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2149D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160105.14e-61nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE331e-43NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLM8CCN93e-80M8CCN9_AEGTA; Nuclear transcription factor Y subunit C-2
STRINGEMT321594e-81(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.37e-32nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]