 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EMT32260 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 186aa MW: 20740.1 Da PI: 8.09 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 33.4 | 8.3e-11 | 1 | 68 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC......................TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkas...................kapskKlsKaeiLekAveYIksLq 55
++Er+RR++iN++f eL l+P + p ++K +iL+ A++Y+k+Lq
EMT32260 1 MAERKRREKINQRFIELSALIPGLKkvfeyvespvgkclidlvtLFPFDQMDKGTILTVATRYVKELQ 68
58*********************777******************999999*****************9 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 9.8E-15 | 1 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 7.22E-10 | 1 | 72 | No hit | No description |
| SMART | SM00353 | 1.6E-8 | 1 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 7.72E-13 | 1 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 13.224 | 1 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.3E-8 | 1 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 186 aa Download sequence Send to blast |
MAERKRREKI NQRFIELSAL IPGLKKVFEY VESPVGKCLI DLVTLFPFDQ MDKGTILTVA 60 TRYVKELQER VRSLEAAGGN HRSVETVVLV RKPCRPVAPD DGEGSARFLL AAGTPATGNQ 120 LPEIEAKLSE DNVMVRIHCE MNGKGLVSRV LTEVEELHLR IVHNDVMPFT ASTVIITTMA 180 KASYHQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 2 | 7 | ERKRRE |
| 2 | 3 | 8 | RKRREK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020170214.1 | 1e-104 | transcription factor NAI1-like | ||||
| TrEMBL | M8C4Q5 | 1e-134 | M8C4Q5_AEGTA; Transcription factor bHLH25 | ||||
| STRING | EMT32260 | 1e-135 | (Aegilops tauschii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP927 | 31 | 143 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G22760.1 | 1e-26 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|