PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT32371

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

YABBY

Protein Properties

Length: 258aa MW: 27611.5 Da PI: 8.4123

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT32371	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	191.7	3.5e-59	19	217	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.....................lleelkveeenlks 84 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ +a + l+++ l ++ +++ + + EMT32371 19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPTAPPATQPPLRPSllsptsphglldevafqtpslL-MDQASTNLSGFT 118 578*******************************************9977666666666666666666888897777666444431.111111111111 PP YABBY 85 nvekeesastsvssekl...........senedeevprvppvir........PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +++++as+ l +++++++++ +p ++r PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+i EMT32371 119 GRSNSSCASN------LpampmpaakpaQQETEQSAKSAPSANRrkdqlflsAPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHI 213 2222222222......1223446777753333333333344554333333337******************************************** PP YABBY 167 hfgl 170 hfgl EMT32371 214 HFGL 217 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.9E-66	20	217	IPR006780	YABBY protein
SuperFamily	SSF47095	1.28E-7	156	210	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-4	166	209	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSSSSSSSAV FNLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL 60 SVNLRALLLP PTAPPATQPP LRPSLLSPTS PHGLLDEVAF QTPSLLMDQA STNLSGFTGR 120 SNSSCASNLP AMPMPAAKPA QQETEQSAKS APSANRRKDQ LFLSAPEKRQ RVPSAYNRFI 180 KDEIQRIKAG NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGFKRTFKAQ DGAEDMLLKD 240 GLYAAAAAAA ANMSVTPL

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274016	1e-119	AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBank	AK106784	1e-119	AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155220.1	1e-174	protein YABBY 4-like isoform X1
Swissprot	A2X7Q3	1e-120	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-120	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	M8D7C7	0.0	M8D7C7_AEGTA; Uncharacterized protein
STRING	EMT32371	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-43	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]