PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32415
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 356aa    MW: 38253.7 Da    PI: 9.2459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32415genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.4e-13244330595
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                 +s+v +  ++v+p++ a    +k+ +s   tl + +grsWe+++  ++++    l++GW++F+ +n L+ gD +vF+l+  + ++  ++v+
  EMT32415 244 VCKSHVQQPFQVVVPRSLAPFLPSKP-TS--ATL-TWQGRSWEMRF--TGGRHIQRLEAGWRSFALDNALRLGDGCVFELVgCDgEGIVFRVQ 330
               567899999999*****996666554.33..443.3699*******..88888889***********************99444444445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-15237333IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-15237334IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-13238333No hitNo description
SMARTSM010196.6E-4240335IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421240335IPR003340B3 DNA binding domain
PfamPF023623.7E-10243322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MATLGLFCRE SIASARMTHG STTRCVALPH RRRCGRLAFE HGGGRATPLL AHRRGGERTM  60
GVVRREHGSA YLPCKAVWAW EMAPALAAVD VGETESHSPA PRMVHQFGRC NRVVVDVAGS  120
SQTNPSSISH PPAPSGLWLM LFFSIPSSSQ ILAMAEPIPA DSSTAVTPPV YRRRNSSEES  180
RGISNAGGKD HGVASSAGET SQAAISAGPP DKLDPESAKA CLEVEKTQPR ILPLLGKPYF  240
ACVVCKSHVQ QPFQVVVPRS LAPFLPSKPT SATLTWQGRS WEMRFTGGRH IQRLEAGWRS  300
FALDNALRLG DGCVFELVGC DGEGIVFRVQ VLRAEIPASI RERAGGYTPS SAIVLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147560.11e-155B3 domain-containing protein Os04g0386900-like
TrEMBLM8C5260.0M8C526_AEGTA; B3 domain-containing protein
STRINGEMT324150.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-06B3 family protein