PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32481
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 256aa    MW: 27338 Da    PI: 8.2424
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32481genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.2e-212067249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +ie++  rqv fskRr+g++KKA+EL vLC+aeva ++fs+ gk + +
  EMT32481 20 KIESEEARQVCFSKRRAGLFKKASELAVLCGAEVAAVVFSPAGKAFSF 67
              69*****************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-341170IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-281181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.7031171IPR002100Transcription factor, MADS-box
CDDcd002651.22E-371279No hitNo description
PRINTSPR004045.8E-201333IPR002100Transcription factor, MADS-box
PfamPF003198.1E-262067IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-203348IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-204869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0009960Biological Processendosperm development
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATAPRRRAS MGRQKIEIRK IESEEARQVC FSKRRAGLFK KASELAVLCG AEVAAVVFSP  60
AGKAFSFGHP SVEAIFDRFV PSAAQHPGAV AAGAGLGASG DRNLAELNRQ YGELRTQLEA  120
EKARKERAEE AMAKERAAGN QMAAWLDADL RDMGEEELMA FAAALVEVQA AVSERANQVL  180
QEALNVGRSR SASRMLQAPP PHQQQQQLAG GGTFEFGGTS TNAGMEIQQK LLAVPPPPPP  240
GFAPGMDIVQ HGGFPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-161188178MEF2 CHIMERA
6byy_B3e-161188178MEF2 CHIMERA
6byy_C3e-161188178MEF2 CHIMERA
6byy_D3e-161188178MEF2 CHIMERA
6bz1_A3e-161188178MEF2 CHIMERA
6bz1_B3e-161188178MEF2 CHIMERA
6bz1_C3e-161188178MEF2 CHIMERA
6bz1_D3e-161188178MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185579.11e-176agamous-like MADS-box protein AGL61
TrEMBLM8D7N00.0M8D7N0_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT324810.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-30AGAMOUS-like 61