PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32482
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9889.5 Da    PI: 11.8187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32482genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-092050434
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdae 34
                +  r+v fskR++g++ KA+E   L++a+
  EMT32482 20 IKEDARYVCFSKRKQGLFNKASEQALLTGAQ 50
              556789**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0048966IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.278950IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-91051IPR002100Transcription factor, MADS-box
PfamPF003191.5E-101850IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MVAKRKGGNG RKKTVPRRII KEDARYVCFS KRKQGLFNKA SEQALLTGAQ TLRRQHGEMR  60
TELVERKKRK KSVNEALPQE HATGTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-49HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172838.12e-22agamous-like MADS-box protein AGL29
TrEMBLM8CXQ43e-55M8CXQ4_AEGTA; Uncharacterized protein
STRINGEMT324825e-56(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-06M-type_MADS family protein