PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32612
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 129aa    MW: 14697.1 Da    PI: 10.1851
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32612genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.3e-251057250
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              rien s+r vtfskRr+g+lKKA EL +LCd+ev vi+fs tg+lyey+
  EMT32612 10 RIENMSRRPVTFSKRRHGLLKKARELAILCDVEVGVIVFS-TGHLYEYA 57
              8**************************************8.7******8 PP
2K-box32.34.3e-12741281270
     K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
               ++++s q++++ L+   + ++ +    +Ge L++L + ++  +e+qLeksl +iR+kK+
  EMT32612  74 QNYQSAQEQHQLLNPVSQVMEAN----MGERLSNLAVTNICLMENQLEKSLHRIREKKE 128
               78999*****************9....******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.048160IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-31159IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-23390IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-193859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-695128IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MVRGKIVIRR IENMSRRPVT FSKRRHGLLK KARELAILCD VEVGVIVFST GHLYEYANST  60
AATSMGTTMP SIIQNYQSAQ EQHQLLNPVS QVMEANMGER LSNLAVTNIC LMENQLEKSL  120
HRIREKKEI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153605.11e-89MADS-box transcription factor 25-like
SwissprotQ84NC54e-35MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLM8CY234e-90M8CY23_AEGTA; MADS-box transcription factor 25
STRINGEMT326126e-91(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-35AGAMOUS-like 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]