PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT32685

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HD-ZIP

Protein Properties

Length: 319aa MW: 34697.1 Da PI: 7.1687

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT32685	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.1	2.6e-17	140	194	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le F+++++++ e++ LA++l+L rqV vWFqNrRa+ k EMT32685 140 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSCLANRLSLRPRQVEVWFQNRRARTK 194 678899***********************************************98 PP
2	HD-ZIP_I/II	117.2	9.1e-38	140	228	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE sF+e+++L+ e+K+ la++L l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++dal++en++L++ev+eLr+ EMT32685 140 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSCLANRLSLRPRQVEVWFQNRRARTKLKQMEADCERLKRCCDALARENRKLQREVAELRA 228 69*************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-17	124	194	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-17	129	197	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	136	196	IPR001356	Homeobox domain
SMART	SM00389	1.3E-12	138	200	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-14	140	194	IPR001356	Homeobox domain
CDD	cd00086	1.47E-14	140	197	No hit	No description
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00187	189	231	No hit	No description
Pfam	PF02183	5.8E-11	196	228	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.8E-13	196	239	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MELELSLGDL PTPVKANTMP APATCQGEDH DDLALGLRVT ATERAGQENQ RTSIETAEGE 60 DSDEACPELP VRASPFRQAS AQTASANSRG FDVNAAVPVD GRASTARSLS PPSMHMEVPV 120 TQGVDEEASE DEDNGGARVR KKLRLSKEQS AFLEGSFKEH STLTLEQKSC LANRLSLRPR 180 QVEVWFQNRR ARTKLKQMEA DCERLKRCCD ALARENRKLQ REVAELRASR APYPLYNLNH 240 HLPGFGAALP SCSSCDATTR STVSTVSSPG PSPMSTLFPG RPHFGPFTVT HPSVILAIVG 300 RSLISICVPV TVRHMPFPG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	RVRKKLR
2	188	196	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249428	0.0	AK249428.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf26g21, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185729.1	0.0	homeobox-leucine zipper protein HOX7-like isoform X1
Swissprot	A2X674	4e-82	HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
Swissprot	Q0E0A6	4e-82	HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBL	M8C5T3	0.0	M8C5T3_AEGTA; Homeobox-leucine zipper protein HOX7
STRING	EMT32685	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12894	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-46	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]