PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32754
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family E2F/DP
Protein Properties Length: 208aa    MW: 23512.2 Da    PI: 10.34
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32754genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.71.4e-2170130371
   E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
               +++Lr++++k   ++ek+e+ g++t+ne  ++    d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  EMT32754  70 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 130
               689*******...*****999******9..566...8899********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-106593IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-2568130IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-1971130IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.2E-1671131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-2294135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440746.8E-17137199No hitNo description
SMARTSM011381.3E-5137208IPR014889Transcription factor DP, C-terminal
PfamPF087815.0E-15138199IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTPESGWVTT FPFAARLPRN RQIPITKPNE PREKTQKGLK ALGFAALSDF TNSIKKKKRR  60
AAAVGPDKGG RGLRQFSMKV CEKVESKGRT TYNEQQYDEK NIRRRVYDAL NVLMAMDIIS  120
KDKKEIQWKG LPRTSINDIE ELQADLAGVK GRIEKKSAYL QELQDQYLGM QNLINRNEQL  180
YGSGNIPTGG VALPFILIQF CFLCIISG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2867135693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459KKKKRR
25559KKKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169029.11e-101transcription factor-like protein DPB isoform X1
SwissprotQ9FNY25e-76DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM8CEE61e-152M8CEE6_AEGTA; Transcription factor Dp
STRINGEMT327541e-153(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-74Transcription factor DP