PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32833
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 188aa    MW: 21689.7 Da    PI: 9.0246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32833genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.71.8e-172370555
              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              hn  ErrRRd+iN+++  L+ellP++   ++   +K+++L +A++Y+ksLq
  EMT32833 23 HNFSERRRRDKINEKLKALQELLPNC---TKVHTDKVSMLDEAIDYLKSLQ 70
              99************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-201687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4791869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-142370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-172374No hitNo description
Gene3DG3DSA:4.10.280.101.1E-192378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-172475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK VHTDKVSMLD  60
EAIDYLKSLQ LQLQMLVMGK GMAPVVPPEL QQYMHYITTD PAAQLMQMPP SEPPQPFQIT  120
HANPPQRESD FLSQMQNHLH PSDQPQINFL RPPKLQLYTP EQRGVVGSSS GHNGGWIPER  180
NSSYNFME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504580.0AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171332.11e-139transcription factor PIF1-like isoform X1
TrEMBLA0A3B6DKI91e-137A0A3B6DKI9_WHEAT; Uncharacterized protein
TrEMBLA0A453CYX71e-137A0A453CYX7_AEGTS; Uncharacterized protein
TrEMBLM8CF531e-137M8CF53_AEGTA; Transcription factor PIF3
STRINGEMT328331e-138(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-29phytochrome interacting factor 3