PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33073
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SRS
Protein Properties Length: 124aa    MW: 12421.6 Da    PI: 6.1288
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33073genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70283.36.1e-26355102154
    DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
               + ++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G+++
  EMT33073   3 ADRFPREVSSEAVFRCVRLGPVDEAEAEVAYQTTVSIGGHVFKGILHDVGPDT 55 
               578***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-23454IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.5E-24553IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAADRFPREV SSEAVFRCVR LGPVDEAEAE VAYQTTVSIG GHVFKGILHD VGPDTSITGG  60
TRTAHHAAEG SSPSTAAAGG AEGGSGSTGA AAVSSSAVVM DPYPTPGPYG AYGGAPFFHG  120
HHPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735251e-159AK373525.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3033N03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156435.11e-80protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A453RQF52e-81A0A453RQF5_AEGTS; Uncharacterized protein
STRINGEMT330735e-82(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.14e-19SHI-related sequence 4