PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33138
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 105aa    MW: 11933.8 Da    PI: 11.423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33138genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.87.8e-133322756
              HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
              +++++ LA++lgL  rqV vWFqNrRa+ k
  EMT33138  3 QKQKAALARQLGLRPRQVEVWFQNRRARTK 32
              68999***********************98 PP
2HD-ZIP_I/II91.21.2e-292592582
  HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82
                 e+++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++
     EMT33138  2 EQKQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCESLKRCCETLTEENRRLQR 59
                 899*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.313134IPR001356Homeobox domain
PfamPF000462.9E-10332IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-11338IPR009057Homeodomain-like
SuperFamilySSF466895.56E-11342IPR009057Homeodomain-like
CDDcd000868.77E-8335No hitNo description
PRINTSPR000311.5E-6514IPR000047Helix-turn-helix motif
PROSITE patternPS000270932IPR017970Homeobox, conserved site
PRINTSPR000311.5E-61430IPR000047Helix-turn-helix motif
PfamPF021831.1E-73458IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.1E-123487IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEQKQKAALA RQLGLRPRQV EVWFQNRRAR TKLKQTEVDC ESLKRCCETL TEENRRLQRG  60
ERVAPSGKPV VDESRAAMVT RAVPTGPWGP VPVLPVFLGR PAQRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12634RRARTKLKQ
24045ESLKRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669662e-84AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06.
GenBankAK3685492e-84AK368549.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169616.12e-58homeobox-leucine zipper protein HOX1-like
SwissprotA2XE766e-29HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL46e-29HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLM8CFX71e-68M8CFX7_AEGTA; Homeobox-leucine zipper protein HOX19
STRINGEMT331382e-69(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-30homeobox from Arabidopsis thaliana