PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33273

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Nin-like

Protein Properties

Length: 346aa MW: 39900.3 Da PI: 9.7005

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33273	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.9	1.3e-25	199	248	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl EMT33273 199 ASITLADIAPYFHLPIREASRALKIGVSILKQKCRQYGIPRWPHRKIKSL 248 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	20.214	183	268	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-21	200	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGTSSPMLRE SQRWGVTTST LTSSPDEVVV DVKRLYWSVA ATMRSFLHRT TLFFLSTGLT 60 LRASIGEAVQ EAVERATQRA LFSHTGNPSW TWLSRGSNNT GELINVKEGR PRWNPGLVCV 120 PSLYNDLYMV YQFQKFQQVP ELVKRDSDEK STRLDAEDKT CDVEVKEESG SDSDEDPQSG 180 EELPAHVARR RRAKKQHIAS ITLADIAPYF HLPIREASRA LKIGVSILKQ KCRQYGIPRW 240 PHRKIKSLDS LISDLEFVMD DTDGDVVQKE TSRQREKERE KEKEKEKEKE KEKQEAIQAL 300 AKRKRLLESE KEIIQQKPAL DLMAETKLFR EDVFKRRYRA KRLPGH

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGTSSPMLRE SQRWGVTTST LTSSPDEVVV DVKRLYWSVA ATMRSFLHRT TLFFLSTGLT  60
LRASIGEAVQ EAVERATQRA LFSHTGNPSW TWLSRGSNNT GELINVKEGR PRWNPGLVCV  120
PSLYNDLYMV YQFQKFQQVP ELVKRDSDEK STRLDAEDKT CDVEVKEESG SDSDEDPQSG  180
EELPAHVARR RRAKKQHIAS ITLADIAPYF HLPIREASRA LKIGVSILKQ KCRQYGIPRW  240
PHRKIKSLDS LISDLEFVMD DTDGDVVQKE TSRQREKERE KEKEKEKEKE KEKQEAIQAL  300
AKRKRLLESE KEIIQQKPAL DLMAETKLFR EDVFKRRYRA KRLPGH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372387	0.0	AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158590.1	1e-166	protein RKD5-like
TrEMBL	M8CGB6	0.0	M8CGB6_AEGTA; Uncharacterized protein
STRING	EMT33273	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-31	RWP-RK domain-containing protein