PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33277

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

TCP

Protein Properties

Length: 259aa MW: 27985.4 Da PI: 9.0901

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33277	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.8	8.4e-26	45	166	34	136
TCP 34 dLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...................kaaksaa.kskksqksaasalnlake 113 +Lqd+LGf k+skt++WLl +k ai e + + +++s+c e++sss s+ +++ +aa+ a+ ++k+++k a+++ ++ke EMT33277 45 ALQDMLGFAKASKTVQWLLDTSKGAIREVMTD--EASSDCeEDGSSSLSVVDGKHKppgteagggdqgegkkpvpRAARRAPaNPKPQRKLASAHPIPDKE 143 79****************************..666679766666666553333357888888999999995555555499999999999999999 PP TCP 114 srakarararertrekmriknkl 136 sr kar+rarertrek+r+++++ EMT33277 144 SRTKARERARERTREKNRMRWVT 166 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	10.238	1	73	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.5E-20	45	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	11.733	142	159	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MASIEGQHTE SKAFKKSSLT IMVGAFFLAQ SYSLKLEFGQ IKCVALQDML GFAKASKTVQ 60 WLLDTSKGAI REVMTDEASS DCEEDGSSSL SVVDGKHKPP GTEAGGGDQG EGKKPVPRAA 120 RRAPANPKPQ RKLASAHPIP DKESRTKARE RARERTREKN RMRWVTLAST INIEPAATGM 180 AAARAGELVT NPNNLINRSS SMNTSRAELE EGCSSSMPSE AIMAGFGNGG YGSSGNYYQY 240 QLEQQWELGG VVFTNSQPY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF543437	0.0	AF543437.1 Leymus cinereus chromosome 4 TCP1 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185348.1	1e-156	transcription factor TEOSINTE BRANCHED 1-like
Swissprot	Q8LN68	6e-70	TB1_ORYSJ; Transcription factor TB1
TrEMBL	M8CZX9	0.0	M8CZX9_AEGTA; Uncharacterized protein
STRING	EMT33277	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-07	TCP family protein

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]