PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33375
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YC
Protein Properties Length: 461aa    MW: 52065.6 Da    PI: 5.2831
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33375genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC141.52e-442873892101
     NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
               l++fw++q   ie+atd+k+h + l ri+ki+kade v+misaeaPv++skace++ le+t+rsw+ +eenkrr lkksd+aaav+rtd++dfl di+p d
  EMT33375 287 LQQFWAQQrseIEQATDIKKHPVQLKRIRKIMKADEGVHMISAEAPVVFSKACEMLTLEMTMRSWMVTEENKRRILKKSDVAAAVARTDVYDFLADIIPLD 387
               89*****99999***************************************************************************************99 PP

     NF-YC 100 el 101
               e+
  EMT33375 388 EM 389
               87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-23252380IPR009072Histone-fold
PfamPF008081.1E-13310371IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.3E-27311385IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDIISLYNPN YIVIPDLEHY AYVTDMLSHA GLFRQAVDLV ENKLQKCSTA GLLNILDACI  60
ILGNFTMAES NAEKYVETEA SVHTAIHCSG SNIWCEINIL VGIIKRKKNK HEWDEQTSSW  120
KWTYGYDCVN NDKDIPIIAA KMTDGRLLPQ DLYHLSISNL TIRIEPSVEA VPEDLLDELE  180
GWDFGNLCQK DGLGNLSLQW VMLLVDHKCI LPQPIRLEQQ WLQLLASLLP VHSQCHVPAP  240
PAIPPAGSQP MPPFPANPAQ LSAQNQLMYE QSQQYQQQLQ QLHQRRLQQF WAQQRSEIEQ  300
ATDIKKHPVQ LKRIRKIMKA DEGVHMISAE APVVFSKACE MLTLEMTMRS WMVTEENKRR  360
ILKKSDVAAA VARTDVYDFL ADIIPLDEMK EEGVGLHRAG PPPPPLGAPA GAYPYYYPPQ  420
LQVPGAAMVH GGQQVPQGHL PHVWIDLQEQ QEKEDQQSES G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-38294385394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLN1R5K90.0N1R5K9_AEGTA; Nuclear transcription factor Y subunit C-2
STRINGEMT333750.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-47nuclear factor Y, subunit C2