PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33382
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 424aa    MW: 45881.7 Da    PI: 8.5495
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33382genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-15218258141
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
    SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 
               kri n+  r  tf kR +g+lKKA EL vLCd++  v++f 
  EMT33382 218 KRIANDVSRRATFGKRSAGLLKKARELAVLCDVDLGVLVFD 258
               79***********************************9985 PP
2K-box29.72.7e-112863691097
     K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLes.LslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
               ++ ++++l  ++a L+ e + L+ + R+  GedL s  +  eL+ Le++Le +l      K++l+ eq++e+ ++ + l+++n  Lr++
  EMT33382 286 NHGEYQKLLADIATLRHERDHLEASVRRQAGEDLPSgATAAELRDLEHKLECALG-----KDKLMEEQLDESHHRVHILEDQNSFLRHM 369
               556799999*************************6637899*************7.....8*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-21210271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.483210261IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-21211297IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-15212232IPR002100Transcription factor, MADS-box
PfamPF003197.1E-16219261IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-15232247IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-15247268IPR002100Transcription factor, MADS-box
PfamPF014863.5E-11287369IPR002487Transcription factor, K-box
PROSITE profilePS512978.345290378IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MQGPPGLHPP APFYPGGYPP PPGWPGYPMP FVPVQGYGAP PGAYPQPGGY PPAGYPQQHG  60
HAPQAGYAVH DKSKKKSSKK GKKGKGGGFG SFLAGAASGA VTVITLTLVD SSSWREGKVV  120
VKRGKDGGKV SKWPRCATTV QEHSGQSHSG SQSRTDESSR KLHRMSPAPD LAAALLPTQL  180
EKKKRKESSR VGSSAPQHTC HARVAGGERM GRGRVEIKRI ANDVSRRATF GKRSAGLLKK  240
ARELAVLCDV DLGVLVFDGA GAGRQLDYCS PNTSWSDLIE RYESINHGEY QKLLADIATL  300
RHERDHLEAS VRRQAGEDLP SGATAAELRD LEHKLECALG KDKLMEEQLD ESHHRVHILE  360
DQNSFLRHMD MMSEEGRQRA AVEASAEVSE LIAPVPPGTL FGGFFPELEE EEAATTIVYC  420
YFPD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768501e-115AK376850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3142C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154090.11e-148MADS-box transcription factor 29-like
TrEMBLN1R5A20.0N1R5A2_AEGTA; MADS-box transcription factor 29
STRINGEMT333820.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1951846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-26AGAMOUS-like 44