PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33611

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 594aa MW: 67493.9 Da PI: 8.024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33611	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.7	1.6e-12	147	233	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YAk GF v +++++k k+++e + +++C+k ++++ k ++er++ +t+C + k++ + ++w+vt+ eH+Hel EMT33611 147 TYAKFHGFAVNTEYHRKIKKTNEYSRGEMRCYKARRNKKGKGVapVVSERKRGIIVKTECPVRCKLNVD-GARWVVTEYFDEHTHELI 233 7*******************************999998776889999*********9999999.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-9	147	233	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MYLPSTSYTG CYGRTTSANV SGQASQLQDS AIAYRAHQIG MTGQIRSAHA AQQGPSTTMN 60 SGAGTSTAGS SERTEEAFHQ PANNHATNNT ESVSEMAIIP ANPASTPWHT STSNTQADET 120 AADTEVNDET DDEAQGDVED GQSEIMTYAK FHGFAVNTEY HRKIKKTNEY SRGEMRCYKA 180 RRNKKGKGVA PVVSERKRGI IVKTECPVRC KLNVDGARWV VTEYFDEHTH ELIKKFDLVK 240 FLTAHRGFTP LEKKFIKLLH DCNVGPSRMV QILSLIHSKN GTLSSMPYIP ADVTNLKAKY 300 HRESRLADIE DTIGYFDEKV KEDPDFFYRI RLDDEDRVRN MWHIIKKAKE TLGPFFADRP 360 DLHKAFELCV DHSLTVEEFE WSWMAMIETY QVQDNETLAS LWEKRMYWVP VYFMHCFFPF 420 LQTTQRSEGF NAVLKRYILG RNKACQHVHG LPGGRTYVQV LVVHDERPES TMEAVRHVVL 480 TKNYAELIDE ACKSDETARV VEKHRKALKR ELDEIKKRKV EEALHRFPRT SSVPSSTEPS 540 SENSEVGSGT ASTQTQVRNP PRSISEGRPK EIRYKSGLEI QEKHKKTKKV TGNQ

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MYLPSTSYTG CYGRTTSANV SGQASQLQDS AIAYRAHQIG MTGQIRSAHA AQQGPSTTMN  60
SGAGTSTAGS SERTEEAFHQ PANNHATNNT ESVSEMAIIP ANPASTPWHT STSNTQADET  120
AADTEVNDET DDEAQGDVED GQSEIMTYAK FHGFAVNTEY HRKIKKTNEY SRGEMRCYKA  180
RRNKKGKGVA PVVSERKRGI IVKTECPVRC KLNVDGARWV VTEYFDEHTH ELIKKFDLVK  240
FLTAHRGFTP LEKKFIKLLH DCNVGPSRMV QILSLIHSKN GTLSSMPYIP ADVTNLKAKY  300
HRESRLADIE DTIGYFDEKV KEDPDFFYRI RLDDEDRVRN MWHIIKKAKE TLGPFFADRP  360
DLHKAFELCV DHSLTVEEFE WSWMAMIETY QVQDNETLAS LWEKRMYWVP VYFMHCFFPF  420
LQTTQRSEGF NAVLKRYILG RNKACQHVHG LPGGRTYVQV LVVHDERPES TMEAVRHVVL  480
TKNYAELIDE ACKSDETARV VEKHRKALKR ELDEIKKRKV EEALHRFPRT SSVPSSTEPS  540
SENSEVGSGT ASTQTQVRNP PRSISEGRPK EIRYKSGLEI QEKHKKTKKV TGNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163103.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	N1R538	0.0	N1R538_AEGTA; Uncharacterized protein
STRING	EMT33611	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-17	FAR1-related sequence 5