PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33668

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C3H

Protein Properties

Length: 220aa MW: 23768.6 Da PI: 8.4707

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33668	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3e-10	98	120	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ EMT33668 98 PDCTYYLKFGTCRFGMKCKFNHP 120 89********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.225	94	122	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	97	122	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-7	98	120	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MADANEKAPP KSNLEADLIA SISPSSTSSG ARNAVAIESQ FADLAISDEL PKPSGWGDDA 60 VLGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC TYYLKFGTCR FGMKCKFNHP 120 ARKKKNRVKA SGSSSSGSND ISNKAFPPDD DQHKVCGGAT PPCCYNVYST SVEGTASTCC 180 ARYRSRGECR LIGQQEFSPE LLGHKIYSKI LDKNKKFYYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370517	0.0	AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179367.1	1e-102	zinc finger CCCH domain-containing protein 65-like isoform X4
Swissprot	Q2QTY2	4e-34	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	N1R4K5	1e-162	N1R4K5_AEGTA; Zinc finger CCCH domain-containing protein 65
STRING	EMT33668	1e-163	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7928	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	8e-11	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]